PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000713024
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22735.3 Da    PI: 6.7874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000713024genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.5e-162470349
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   ie      v+fskRr g++ KA  LS LC+aevavi+fs+ g+ y +
  MDP0000713024 24 IEKPNSLLVSFSKRRGGLFRKACQLSGLCGAEVAVIVFSPCGRXYVF 70
                   555566679*********************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.961474IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-191473IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-141636IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-211786IPR002100Transcription factor, MADS-box
PfamPF003197.5E-192370IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-143651IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-145172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MPGIINTALP NQKPVQRKLV IKKIEKPNSL LVSFSKRRGG LFRKACQLSG LCGAEVAVIV  60
FSPCGRXYVF GHPSVDSVLS RLERVXTALH GHQYISMHAS SEAEDHXTDS SSIIESNSKE  120
SCMVSKTSID LENLGLDLEK DTEEXEEDEA SKFWWDQPIE NVKKLDELKQ FKSSLEKLKA  180
KVITQLDEXE MRXXVVRHYL M*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350236.21e-132agamous-like MADS-box protein AGL62
TrEMBLA0A498IGR75e-82A0A498IGR7_MALDO; Uncharacterized protein
STRINGXP_008350236.11e-140(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-23AGAMOUS-like 62