PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000715138
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 239aa    MW: 26661.5 Da    PI: 4.9441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000715138genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.53.1e-081301691352
           GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaar 52 
                    ++ d   a + L rl+el+s + dp++R+a+yf+eAL++r
  MDP0000715138 130 TKFDPDGAVKSLVRLRELVSDHEDPTERVAFYFAEALQNR 169
                    55677789999***************************98 PP
2GRAS43.26.4e-1417321382122
           GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122
                    ++ +++ P+ kf+hltaNqaIlea+++++++Hi+Df i q 
  MDP0000715138 173 TIAYDTYPYSKFAHLTANQAILEATKRATKIHIVDFRIVQA 213
                    5668999******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.5893238IPR005202Transcription factor GRAS
PfamPF035141.1E-5130169IPR005202Transcription factor GRAS
PfamPF035142.2E-11173213IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTQQQPPHSA GFRFSDLGYS SPAEFDSDEW MDSIKGGGDS TDSSNLPSTC DTWQGSNFDF  60
GIYGANPFRP HCPTWTPPLP QQLHQVSVKE SKSTDPQSLQ NDTVGVSLKS PEIESEPLLL  120
KAFLDSARLT KFDPDGAVKS LVRLRELVSD HEDPTERVAF YFAEALQNRK SFTIAYDTYP  180
YSKFAHLTAN QAILEATKRA TKIHIVDFRI VQAAFNYIET ALSKFEDXPF FLGKFSLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-211192124120GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13521e-119bud| fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338470.21e-111SCARECROW-LIKE protein 7
RefseqXP_009350005.11e-111PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I03e-53SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLD9ZJB66e-96D9ZJB6_MALDO; SCL domain class transcription factor
STRINGXP_009350005.11e-111(Pyrus x bretschneideri)
STRINGXP_008338470.11e-111(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-40GRAS family protein