PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000722092
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 455aa    MW: 51287.8 Da    PI: 7.1501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000722092genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.64.7e-40611902128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    ppG rF Ptd+el+++yL++k+ ++     ++++ i++++iy+++P++L +k++  e+ e+yfF++rdkky++g r++r++++g+Wkatg +k+++
  MDP0000722092  61 PPGWRFCPTDQELISFYLTRKLMNNIyhpQPVNSRITDLHIYDFNPKKLAEKYQLpEDPEMYFFTPRDKKYPNGCRPSRTAADGFWKATGGNKNIK 156
                    9*********************9998666677677**************9666553666************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +g+++g k+tLvf+ g+++kg+ktdW+m+ey++
  MDP0000722092 157 E-RGKTIGYKNTLVFFLGTQKKGTKTDWIMQEYTI 190
                    9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-4655218IPR003441NAC domain
PROSITE profilePS5100546.27960220IPR003441NAC domain
PfamPF023651.9E-2261190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MASTSTNPTY SHSAPPAAAA LDGQEGGQQY HGYQHEHHHG RHDKEDPKQM MRNERLVLGI  60
PPGWRFCPTD QELISFYLTR KLMNNIYHPQ PVNSRITDLH IYDFNPKKLA EKYQLPEDPE  120
MYFFTPRDKK YPNGCRPSRT AADGFWKATG GNKNIKERGK TIGYKNTLVF FLGTQKKGTK  180
TDWIMQEYTI RQYKPSNRPA PAGHCDTKLD KWVLCKIYEH KKSKKNRKNG SVSDDDEEEI  240
NSSSALVLQG QESQDHPLLH KPLSPPRNNM NHDGPSTSYQ AGHYNMINNN HSXYALNNGL  300
MSPLGSTNGY GAHQDQVRHL APMLHLPGQQ MQPIPLVHST DVNNQDAHAF NGITTYYNQS  360
TQYGFGDQSV PMYNNASQLN NNGYPSSIIS VDTMDQYWLN EPLTDFDFLF DAIGEGVLYG  420
MPDVLPLSSM PHINPASQST KADEKSSTTP TDNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-415822315168NO APICAL MERISTEM PROTEIN
1ut4_B1e-415822315168NO APICAL MERISTEM PROTEIN
1ut7_A1e-415822315168NO APICAL MERISTEM PROTEIN
1ut7_B1e-415822315168NO APICAL MERISTEM PROTEIN
4dul_A1e-415822315168NAC domain-containing protein 19
4dul_B1e-415822315168NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392252.20.0NAC domain-containing protein 2-like
TrEMBLA0A498I3F00.0A0A498I3F0_MALDO; Uncharacterized protein
STRINGXP_008392252.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2051144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.15e-44NAC domain containing protein 3