PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000723277

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 237aa MW: 27279 Da PI: 5.9483

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000723277	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.6	2.2e-31	22	101	51	129
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +k + +ewyfFs rd+kyatg r+nrat++gyWkatgkd+ v++ +ge vg++ktLvfy++rap+g kt W+mhe+rle MDP0000723277 22 AKLNANEWYFFSFRDRKYATGFRTNRATSTGYWKATGKDRLVMEPgTGEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 101 344678************************************988899*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.275	1	119	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-39	22	119	IPR003441	NAC domain
Pfam	PF02365	1.7E-15	27	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MQIMWAIFDH LMPPVMCKNQ VAKLNANEWY FFSFRDRKYA TGFRTNRATS TGYWKATGKD 60 RLVMEPGTGE IVGMRKTLVF YRNRAPNGIK TGWIMHEFRL ETPHMPPKED WVLCRVFYKG 120 KGAEDSTKLN PHDFMLETTP CTVPLNLVPP PPTYDQTMPC VYNQNHSQSN AFLNLLQLPH 180 QEKYTNSSVS ELNTKNDDEY GFLWDMNLEE GSFDNGVAPN LDEMGFQVDE NSMVLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	1	124	46	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	1	124	46	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	1	124	46	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	1	124	46	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	1	124	49	173	NAC domain-containing protein 19
3swm_B	2e-28	1	124	49	173	NAC domain-containing protein 19
3swm_C	2e-28	1	124	49	173	NAC domain-containing protein 19
3swm_D	2e-28	1	124	49	173	NAC domain-containing protein 19
3swp_A	2e-28	1	124	49	173	NAC domain-containing protein 19
3swp_B	2e-28	1	124	49	173	NAC domain-containing protein 19
3swp_C	2e-28	1	124	49	173	NAC domain-containing protein 19
3swp_D	2e-28	1	124	49	173	NAC domain-containing protein 19
4dul_A	1e-28	1	124	46	170	NAC domain-containing protein 19
4dul_B	1e-28	1	124	46	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198122	0.0	KF198122.1 Malus hupehensis NAC domain protein (NAC86) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028958429.1	1e-162	NAC domain-containing protein 21/22-like
TrEMBL	A0A498JXQ4	1e-160	A0A498JXQ4_MALDO; Uncharacterized protein
STRING	XP_009336141.1	1e-143	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-60	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	MDP0000723277