PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000725991
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 253aa    MW: 28344.9 Da    PI: 7.2215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000725991genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08124171455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN+++  L+ l+P +     k +  a +L  ++ Y++sLq
  MDP0000725991 124 SHSLAERVRREKINERLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 171
                    8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.32E-11118175No hitNo description
SuperFamilySSF474591.83E-16118189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-16120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-8126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MELIDDLCDL ETSLGANHHE IMTLSANDTS FTTDHHHQPQ PDQLPINFTH HIQSFPHNSD  60
DPNHDDFLVA HSTAHLMTGD FRQETGKGKS FGGRKRKINN SDKDGEKLKE VIHVRAKRGQ  120
ATDSHSLAER VRREKINERL RCLQNLVPGC YKTMGMAVML DVVISYVQSL QKQIEFLSMK  180
LSAASAYYDF NSPGVDAADA MQQQQMKVIK RAMWNVAGDK YCISRGTRDG SKIRDSEGYG  240
GLPHLNNAAW PI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951208.11e-153transcription factor bHLH75-like
SwissprotA4D9982e-48BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A498HKX91e-152A0A498HKX9_MALDO; Uncharacterized protein
STRINGXP_008339657.11e-153(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148131112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.19e-49bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]