PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000727700
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 353aa    MW: 38761.9 Da    PI: 10.0362
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000727700genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.2e-1551134186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  v  L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +   +      s++p++ +l+
  MDP0000727700  51 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESAAGDG------SSWPLYPRLD 134
                    5*************************************854444555566679*************99887776......4699999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2049134No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDSETNQENP SLPPNNYTTT TTKELESPPR SKPPQQPPLG GSGGDRLKRD EWSEGAVSSL  60
LEAYETKWVL RNRAKLKGHD WEDVARHVSS RANCTKSPKT QTQCKNKIES MKKRYRSESA  120
AGDGSSWPLY PRLDLLLRGS GTSPTAAAAA AAAVAATVPP PPLPPLQLLH TLPQNDHPLM  180
LLEPSAPPPL PPPPQPPAPP PLMGTAQNSF GSNGADHRVA KEDAVGMKLS DHASDKNPLE  240
VDSSTPALYS DKEQLRSKRM KRKMEKKKRR RREEVDVAES IRWLAEVVVR SEQARMDSMR  300
EIERMRVEAE AKRGEMDLKR TEIIANTQLE IARLFAAGGG KGVDSSLRIG RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270KKKRRR
2265271KKKRRRR
3266271KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532030.0AB853203.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH155.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354892.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A498KD010.0A0A498KD01_MALDO; Uncharacterized protein
STRINGXP_008354892.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-98sequence-specific DNA binding transcription factors