PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000729514
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 495aa    MW: 55530.2 Da    PI: 7.1191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000729514genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12319364454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  MDP0000729514 319 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYINEL 364
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-3722200IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.58E-17313378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-14313368No hitNo description
PROSITE profilePS5088816.863315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-16319376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEEINSSWSS YNFGQENSLT LQRLQFIIQN RPEWWVYSIF WQASKDSNGL VYLSWAGGHF  60
RSTRDLASKR SYNKANDFDX VERKKGIRKE VEALFYEHMD LDGGDVTDAE WFYFYTASLT  120
QSFTASHGNI LGGTFCSGDF VWLAGDHELQ FYECERVKEA RMHGIHTLVC IATSCGVLEL  180
ASFDVIKVDW GLVEMSKSLF GSKNNNSVSK QLCSSREDHV LVPLLERGMF SGAEQIEWTT  240
QGNQIGPKIF NTTSVWLVPI PKTNIQISGG TKEVDPVTIG GSXSDSVGNF TSENMENIRL  300
KKRGRSSNSE TGRSETPINH VEAERQRREK LNHRFYALRS VVPNVSRMDK ASLLSDAVAY  360
INELKARVVQ LEAKIQAQPG KPVVDIGGQT TCSIVDHHQT RPRQSSSYNN RAAGAMKIDV  420
KIVGSEAMIR VQCPDCDYPN ARLMNALKSL ELQVYHASIS SVKELMLQDV VARVPQGFTS  480
EEALRIAIIK GWYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25312374263Transcription factor MYC2
5gnj_B3e-25312374263Transcription factor MYC2
5gnj_E3e-25312374263Transcription factor MYC2
5gnj_F3e-25312374263Transcription factor MYC2
5gnj_G3e-25312374263Transcription factor MYC2
5gnj_I3e-25312374263Transcription factor MYC2
5gnj_M3e-25312374263Transcription factor MYC2
5gnj_N3e-25312374263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299305LKKRGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257380.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360190.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498JIU60.0A0A498JIU6_MALDO; Uncharacterized protein
STRINGXP_008374122.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-61bHLH family protein