PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000731330

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 384aa MW: 42110.8 Da PI: 7.7833

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000731330	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.8	6.7e-07	195	238	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ el+P+ + K++ +++LekA+ Y+k Lq MDP0000731330 195 IAAKNRRERISERLXIXXELVPNgC------KVDLVTMLEKAIXYVKFLQ 238 5679*****************77......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-10	188	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.887	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	189	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.03E-8	190	242	No hit	No description
SMART	SM00353	1.3E-6	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MALAKDIRIS TPHDSCTHES LQVSDLSDGF VFRATSNYQP DHLINFKSGY YNSGXSLLSF 60 DKNKQSSQSI YLNXSTSKDX CDSDLYHGSY SQWNQMAGIG DPRLSGDFSC LQTASNYSSS 120 IPNTSKEDHG DHEAYAWLHS EASDSFQEPD EQKAGFHKRP ITGESMQPSK KQCTGSTKKP 180 KPKSSTSPSK DPQSIAAKNR RERISERLXI XXELVPNGCK VDLVTMLEKA IXYVKFLQLQ 240 VKVLATDEFW PVQGGKAPDI SQVKEAIEAI LSSSQRDTSS SSNSGDPLEL GRGNWGLGIG 300 IAGGIGNGCG SGSGSRGGRG DESVFGKGFG KDCLRIRNEW DRRRRCLGQR EGRGKVLLGR 360 GETYHGDERH QSRLEGYDPS TYQ*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MALAKDIRIS TPHDSCTHES LQVSDLSDGF VFRATSNYQP DHLINFKSGY YNSGXSLLSF  60
DKNKQSSQSI YLNXSTSKDX CDSDLYHGSY SQWNQMAGIG DPRLSGDFSC LQTASNYSSS  120
IPNTSKEDHG DHEAYAWLHS EASDSFQEPD EQKAGFHKRP ITGESMQPSK KQCTGSTKKP  180
KPKSSTSPSK DPQSIAAKNR RERISERLXI XXELVPNGCK VDLVTMLEKA IXYVKFLQLQ  240
VKVLATDEFW PVQGGKAPDI SQVKEAIEAI LSSSQRDTSS SSNSGDPLEL GRGNWGLGIG  300
IAGGIGNGCG SGSGSRGGRG DESVFGKGFG KDCLRIRNEW DRRRRCLGQR EGRGKVLLGR  360
GETYHGDERH QSRLEGYDPS TYQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381321.2	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	2e-60	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A498J5U8	0.0	A0A498J5U8_MALDO; Uncharacterized protein
STRING	XP_008381321.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	4e-41	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	MDP0000731330

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]