PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000756341
Common NameAP2D42, LOC103455948
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 161aa    MW: 17967 Da    PI: 9.6282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000756341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-173281255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  MDP0000756341 32 QYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPMAAARAYDTAVFYLRG 81
                   7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-303190IPR001471AP2/ERF domain
CDDcd000181.39E-273191No hitNo description
SuperFamilySSF541714.38E-213290IPR016177DNA-binding domain
SMARTSM003801.6E-363295IPR001471AP2/ERF domain
PfamPF008471.4E-103281IPR001471AP2/ERF domain
PROSITE profilePS5103222.4183289IPR001471AP2/ERF domain
PRINTSPR003677.2E-123344IPR001471AP2/ERF domain
PRINTSPR003677.2E-127191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEGDYCCSSS SSSSTSTSME KRKHPDHRQE KQYRGIRMRK WGKWVAEIRE PNKRSRIWLG  60
SYTTPMAAAR AYDTAVFYLR GPSARLNFPE LVFQDDGQQL HDMSAASIRK KATEVGAKVD  120
AVQTALRSSP TSQSKTTLSR GGSLKPDLNE YPDPENSDES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-163192466ATERF1
3gcc_A6e-163192466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.154660.0fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324660.0GU732466.1 Malus x domestica AP2 domain class transcription factor (AP2D42) mRNA, complete cds.
GenBankJF4123520.0JF412352.1 Malus x domestica ethylene response factor 5 mRNA, complete cds.
GenBankJQ6557680.0JQ655768.1 Malus sieversii dehydration-responsive element binding protein (DREBA5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288046.11e-117ethylene-responsive transcription factor ERF011-like
SwissprotO221748e-52ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLD5L1261e-116D5L126_MALDO; AP2 domain class transcription factor
TrEMBLI6U5741e-116I6U574_9ROSA; Dehydration-responsive element binding protein
STRINGXP_008393783.11e-117(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-53DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]
  3. Akagi A,Dandekar AM,Stotz HU
    Resistance of Malus domestica fruit to Botrytis cinerea depends on endogenous ethylene biosynthesis.
    Phytopathology, 2011. 101(11): p. 1311-21
    [PMID:21809978]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]