PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000759061

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 318aa MW: 35094.4 Da PI: 6.7594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000759061	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.2	4.7e-35	18	72	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC +ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+r+n++ MDP0000759061 18 NCPRCGCSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRRNRRG 72 8***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	14	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.202	17	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-29	18	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MERAGWKPND DHHHISPNCP RCGCSNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV 60 PVGGGCRRNR RGSKSLRLSA TYTTSTTEGH AHHNTNKSRA STYEGAHNSY GTNVLGDSTS 120 PSVTQDGSHI DLALVYANFL KQKPDNSDST TGSDHQLPEL PSEFDPAALD FSSMALNMNN 180 ASSDNTSTQV MDDHYHQNGL VGSLGCHTLS HDHLSTENCS TNDRMYFGEL DPLIHHPEKH 240 HHQHTSEVVQ YASDFGLPPL PGQEALWSTT SQMMDCGSHT MQAGTSLLGH ELHNPNSLMG 300 SWSPFDLPCN ETFSRST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	70	RNVPVGGGCRRNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387178.1	0.0	dof zinc finger protein DOF3.5
TrEMBL	A0A498ID58	0.0	A0A498ID58_MALDO; Uncharacterized protein
STRING	XP_008387178.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	MDP0000759061