PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000768369
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 186aa    MW: 20613.8 Da    PI: 9.9902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000768369genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174264123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  MDP0000768369 42 FECKTCNRKFTSFQALGGHKASH 64
                   89**********99998888877 PP
2zf-C2H210.70.001699121123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++Cg  F     L  H+r+H
  MDP0000768369  99 HKCSICGLEFGMGQALGGHMRRH 121
                    79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-114166IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-84164No hitNo description
PROSITE profilePS5015710.3674269IPR007087Zinc finger, C2H2
SMARTSM003550.184264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-894121No hitNo description
PfamPF139123.7E-1198123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.41199126IPR007087Zinc finger, C2H2
SMARTSM003550.1799121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKRDMRGEES GFGLKGLDMA KCLMLLSCGM ETKFKTCSND VFECKTCNRK FTSFQALGGH  60
KASHKRSRIL MSRDDEXCKD EREKGSDKSM VMNKKAKTHK CSICGLEFGM GQALGGHMRR  120
HRASNMDMAG FSYAPSAVTS KIPVLTRSSS KRVMSLEMDL NLTPLENDLK LLFGKMAPKV  180
DAFVS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345441.21e-132zinc finger protein ZAT11-like
SwissprotQ9SLD42e-44ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A498K4T01e-125A0A498K4T0_MALDO; Uncharacterized protein
STRINGXP_008345441.11e-132(Malus domestica)
STRINGXP_008369844.11e-132(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-47C2H2 family protein