PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000774664

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 108aa MW: 11876.5 Da PI: 11.6791

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000774664	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.1	2.9e-14	6	65	17	76
DUF260 17 vlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +lapyfp++ p + n+h+lFG+ ++ +l++alp + r+ ms+++ eA+ ra++Pv a MDP0000774664 6 PLAPYFPSNYPTNSHNAHELFGVGRLEQLVTALPLHLRNPXMSTIFVEANQRAKNPVGAA 65 58******************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.042	1	90	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-11	6	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MHRGLPLAPY FPSNYPTNSH NAHELFGVGR LEQLVTALPL HLRNPXMSTI FVEANQRAKN 60 PVGAARPLSG RYSVPSTSTR RNLTACATSL NCAPAAAMLW RKLWRTF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365511.1	2e-23	PREDICTED: LOB domain-containing protein 25-like
TrEMBL	A0A498HVN8	6e-21	A0A498HVN8_MALDO; Uncharacterized protein
STRING	XP_009365511.1	8e-23	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22907	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-11	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	MDP0000774664