PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000784909
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 749aa    MW: 81537.5 Da    PI: 5.7588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000784909genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.91.4e-953897472374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    +++L+++Ae +++g+  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l+  ++s++++al+p      + + ++ a+k fse+sP+++f+++
  MDP0000784909 389 IDQLFNAAELIETGNSVLAQGILARLNHQLSPIGKPFSRAAFYFKEALQLLLHTnTSSNCSSALSP-----FSLIFKIGAYKSFSEISPVVQFANF 479
                    689**************************************************9334444444433.....3479********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a  ++g psl+iT++ s++++++ e++ t+e+L++fA+el++ fe +++  ++l+    +
  MDP0000784909 480 TCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALGNGGVPSLKITAFISSSTHDEFEVSFTRENLKHFASELNLAFELELVSLESLN-SGSW 574
                    *****************************************************9*9***************************97444444.4578 PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     L ++  E +aV + l + ++ ++++sl+     +L++vk+lsP++vv  ++ +d+ + +F +++++a++ ys l++s++a    + ++ +k+Er 
  MDP0000784909 575 GLPLHASEGVAVAVNLPIGSFSNNPLSLPL----ILRFVKQLSPRIVVSLDRGSDRIDVPFPHQIIQAIHSYSGLLESIDAA-NVNPDALQKIERY 665
                    999999999999999999999999999999....*********************************************665.34668999***** PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ll++ i+++v+ ++       ++  +Wr  + ++GF+p+++s+++++qa++l++++++ g+++e+++ slvl+W+ + L+s+SaWr
  MDP0000784909 666 LLQPGIEKIVTGRHLL----PKRTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKKQSSLVLCWQCKDLISASAWR 747
                    ***********99988....9999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.603362727IPR005202Transcription factor GRAS
PfamPF035144.8E-93389747IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MKAMPLPFEE FQGKGVLDFS SVPSSAAAAS DSFLSPPPPP PQKWNHHHQN SKENCYVGSS  60
EPTSVLDTRR SASPPTSSST LSSSHGSGAS GGCGRSTDTT TAGVENPSRT PLEEQKCGPP  120
LGMEDWESVL SESPGQEQSI LRLIMSDIED PSLGLNTLLQ SSSGSDHLHQ DLEFSGGGFH  180
DVVDQGGYGG GFEPNNNSGS LVSPSLHASS GPDFNFNNNV SNVETRSSNV RPNPTMFSGS  240
MSNPFLVSQS SGMFQQQQST GLDEKPQIFN PQMVINQNQA QFAQYPAMFM PLTYAQLQEH  300
HLLSPPPSKR LNSGELGPSY PVQSVPFSNP GQELVVRAQQ QLQFLPQHLQ QQRPTMPVAK  360
EKMMSPTEGG KEMMNQNQLQ QQQFQQAVID QLFNAAELIE TGNSVLAQGI LARLNHQLSP  420
IGKPFSRAAF YFKEALQLLL HTNTSSNCSS ALSPFSLIFK IGAYKSFSEI SPVVQFANFT  480
CNQAILEAVE GFNRVHVIDF DIGYGGQWAS FMQEVALGNG GVPSLKITAF ISSSTHDEFE  540
VSFTRENLKH FASELNLAFE LELVSLESLN SGSWGLPLHA SEGVAVAVNL PIGSFSNNPL  600
SLPLILRFVK QLSPRIVVSL DRGSDRIDVP FPHQIIQAIH SYSGLLESID AANVNPDALQ  660
KIERYLLQPG IEKIVTGRHL LPKRTPSWRT LFLSSGFSPL TFSNFTESQA ECLVQRTPVG  720
GFHIEKKQSS LVLCWQCKDL ISASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-2739674627378Protein SCARECROW
5b3h_A6e-2739674626377Protein SCARECROW
5b3h_D6e-2739674626377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.221750.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341645.10.0scarecrow-like protein 22
TrEMBLA0A498KF990.0A0A498KF99_MALDO; Uncharacterized protein
STRINGXP_008341645.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-138GRAS family protein