PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000785660

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 658aa MW: 72923.1 Da PI: 5.4083

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000785660	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.6e-07	49	71	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C G++C F+Hgp MDP0000785660 49 VPCIFFQK-GQCLKGEKCAFSHGP 71 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.206	45	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-5	45	71	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.88E-5	46	70	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-4	50	71	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MRVSAPPLDG LLGSPAANSA GPSLPLSHPG VTPTAPATHA AYNPSKQAVP CIFFQKGQCL 60 KGEKCAFSHG PNPMASSKFL QTPAPHGTEP SGLKKAFGGL QKCIQELKVP KASVAKSVGV 120 PPEAKPAPKI LTAPIRNGVS IERNVQSTKA LDDEALRYKA TSVPPVINGG STSRANHLPQ 180 VHVSDYHGFQ NVKDVDEHLR ESSPGFDVLV DDELGDSDYY HGEDXXGRTR GHEGRNLNSX 240 NEYDLDRPVD YTSMADVDRE RFCDPRGYDP YDRMQGQYAW DQHRASSERQ LVGPARLERR 300 GYRKSESPEN IDELDLRHRL SKHRRVNGLR SIVSHDYAVD GHVEERNNRP LRDSQQLPPH 360 EGSRSSRLHG RIKLPGGSSP VNGSDLHQER EVDRARSQGR LSPRRPQISS HQGRLRDRIK 420 GRVEEDYDNE RRNFGAPLVR REIMDDRGDD FSRPKRLPDL KVVKDAENKE QSYLGKRKSV 480 MDNNNQAVGD LSFEGPKPLS EILKRKREAE AAAASGSRKS SAHDKRGNNQ RESRESNQGN 540 SQTAVTETNN SLPPAAKEEP KFAMADAVGT EDEKVDVAPG QSSEGHEVGE VEAEEGMIYE 600 ENEIEGDDQR EGEYDYEQGD EGDYNYEEGE NAEGEEEYLE EDEDGDDFAK KIGVMFS*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MRVSAPPLDG LLGSPAANSA GPSLPLSHPG VTPTAPATHA AYNPSKQAVP CIFFQKGQCL  60
KGEKCAFSHG PNPMASSKFL QTPAPHGTEP SGLKKAFGGL QKCIQELKVP KASVAKSVGV  120
PPEAKPAPKI LTAPIRNGVS IERNVQSTKA LDDEALRYKA TSVPPVINGG STSRANHLPQ  180
VHVSDYHGFQ NVKDVDEHLR ESSPGFDVLV DDELGDSDYY HGEDXXGRTR GHEGRNLNSX  240
NEYDLDRPVD YTSMADVDRE RFCDPRGYDP YDRMQGQYAW DQHRASSERQ LVGPARLERR  300
GYRKSESPEN IDELDLRHRL SKHRRVNGLR SIVSHDYAVD GHVEERNNRP LRDSQQLPPH  360
EGSRSSRLHG RIKLPGGSSP VNGSDLHQER EVDRARSQGR LSPRRPQISS HQGRLRDRIK  420
GRVEEDYDNE RRNFGAPLVR REIMDDRGDD FSRPKRLPDL KVVKDAENKE QSYLGKRKSV  480
MDNNNQAVGD LSFEGPKPLS EILKRKREAE AAAASGSRKS SAHDKRGNNQ RESRESNQGN  540
SQTAVTETNN SLPPAAKEEP KFAMADAVGT EDEKVDVAPG QSSEGHEVGE VEAEEGMIYE  600
ENEIEGDDQR EGEYDYEQGD EGDYNYEEGE NAEGEEEYLE EDEDGDDFAK KIGVMFS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22823	1e-74	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028946991.1	0.0	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like
TrEMBL	A0A498IA47	0.0	A0A498IA47_MALDO; Uncharacterized protein
STRING	XP_008389960.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37

Link Out ? help Back to Top
Phytozome	MDP0000785660