PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000788644
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 98aa    MW: 10825.9 Da    PI: 8.9625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000788644genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081356344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W+ +a+ +  g+t +++k ++
    MDP0000788644 13 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVD-GKTVEEVKRHY 56
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.226660IPR017877Myb-like domain
SMARTSM007172.6E-71062IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-41359IPR009057Homeodomain-like
PfamPF002493.3E-61356IPR001005SANT/Myb domain
CDDcd001674.09E-61456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASVSSSRNH SSSWTPKQNK LFEKALAVYD KDTQDRWHNV AKAVDGKTVE EVKRHYEILV  60
HDLMHIESGQ VPIPNYKATG SSSSSNGSNR GLGDEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-34486183RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.251272e-94fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388050.13e-67protein RADIALIS-like 6
SwissprotQ1A1733e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A498HVM26e-47A0A498HVM2_MALDO; Uncharacterized protein
STRINGXP_008388050.11e-66(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-36RAD-like 6