PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000794101

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 227aa MW: 24537.5 Da PI: 7.5421

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000794101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.5	3.2e-31	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+p++ p++q++++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r +Pv+Gavg+++++++q++q++ MDP0000794101 2 SCNGCRVLRKGCSETCILRPCLhwidsPQAQANATLFLAKFFGRSDLLSFVSAVPETQRPALFQSLLFEACGRSVNPVNGAVGLLSSGNWQVCQSA 97 6*********************************************************************************************** PP DUF260 92 aelal 96 +e++l MDP0000794101 98 VETVL 102 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.872	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLHWIDSPQ AQANATLFLA KFFGRSDLLS FVSAVPETQR 60 PALFQSLLFE ACGRSVNPVN GAVGLLSSGN WQVCQSAVET VLSGGVLRPL PAFTTPSLDE 120 SSDTFSRGTC TXQNRYYQSV PSASAYYGEE RSQPFEPAGL SLKPNLAAGE RGRGRGMRSY 180 ISAAMDQRLR DTVSFDSEES VMTTTTTRCL ESGGDLKDCK LLNLFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23857	4e-69	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008393744.2	1e-165	LOB domain-containing protein 37-like
Swissprot	Q9SN23	5e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A498HRD9	1e-164	A0A498HRD9_MALDO; Uncharacterized protein
STRING	XP_008393744.1	1e-165	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	4e-65	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	MDP0000794101