PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000794913
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 322aa    MW: 35736.7 Da    PI: 9.2873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000794913genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.3e-15108159155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A+e++k+L+
  MDP0000794913 108 QRMTHIAVERNRRKQMNDHLAILRSLMPDS---YAQRGDQASIVGGAIEFVKELE 159
                    79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17106180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-10106156No hitNo description
PROSITE profilePS5088815.351107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13108177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-12108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPLLEDPPFN FIVYDTISAT PYTSQAQDYS SETTNNFIPP KKFYYCNNAA AKSSNTSVIL  60
EAAGGGGGKK TKQMSSNQQP QGQGEGQGRK KRRRKARVCK NKEEAETQRM THIAVERNRR  120
KQMNDHLAIL RSLMPDSYAQ RGDQASIVGG AIEFVKELEH LLLSLEAQKL QLFQHQQQHN  180
PEDIVATPSK IVPSSPFTQL LEYPQKHSWS HSHCPNNKYT SKTKGATADI EVTLIETHAN  240
LKILSRKNIA ARSQLSKLIA GIHSLHLTIL HLTVSTVDPF VLYSISLKIE EGCLLSSADD  300
IAASLHHMLR VIEEAAARLL C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894RKKRRRK
28994KKRRRK
3108119RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128930.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373582.10.0transcription factor bHLH71
SwissprotQ56XR01e-62BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A498JPS10.0A0A498JPS1_MALDO; Uncharacterized protein
STRINGXP_008373582.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.13e-48beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]