PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000795432
Common NameMYBR8
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 462aa    MW: 50257.5 Da    PI: 7.3187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000795432genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-175498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
    MDP0000795432 54 RAKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 98
                     569*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1748104IPR009057Homeodomain-like
PROSITE profilePS5129421.60449103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-951101IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-1652101IPR006447Myb domain, plants
SMARTSM007174.8E-1353101IPR001005SANT/Myb domain
PfamPF002491.3E-145497IPR001005SANT/Myb domain
CDDcd001672.33E-115699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAVEDKIEAT GSNASVAVGN CSSNGDAQSN AEICSFGSDH APKVRKPYTI TKQRAKWTEE  60
EHQKFLEALK LYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVSKESCGPS EGSIRPIEIP  120
PPRPKRKPVH PYPRKSVDCL NGTPERSPSP QFSAQGKDQQ SPPSVLSAQG SDLLGSAALD  180
QHNRSSTPTS CTTDMHSTGP SHFEKENDSM TFSSSAEEVQ GSSPSVQLSA DSVLEKFPSV  240
NYRSGSKHTV STEEDAGNSG ASTSIKLFGR TVSVLDSEKQ SPTGAKDSKT PTSKVEQDNC  300
ERENDELVQT PRSDLLDTSL TLGGIVGNLY PSACGGTTTW EHQKHSPNPE APLPWWDMYH  360
GLPCFHIRSC NQNSAQIQIR VDSCADETIK QTERSFGGAV ESLGEKHVES VSSLREETRS  420
APCSSRKGFV PYKRCLADVN KNSSAIVSEN MRDRRRARVC S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132190.0bud| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0016710.0KM001671.1 Pyrus x bretschneideri transcription factor MYBR (MYBR) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393486.20.0protein REVEILLE 7-like
TrEMBLD9ZJ850.0D9ZJ85_MALDO; MYBR domain class transcription factor
STRINGXP_009355963.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.19e-51MYB_related family protein