PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000796501
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 210aa    MW: 23357.9 Da    PI: 8.5187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000796501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-053252323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C+ C+++F +   L  Hi +H
  MDP0000796501 32 CKLCDRVFXSTKALIAHIESH 52
                   ******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7023057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSRYNWNWRQ GNMFGSSNPA PPRATDPTQI ACKLCDRVFX STKALIAHIE SHLADDDLST  60
TARLRQLNLP NSTDPFISSN APLRPSTNPF HQRSLFHGVN NQICFVPSPA PPPPPQTHYQ  120
FPHPQQPQQP QVPHYLLPRN PNVNSGAAGS HHMMMPYGNQ MAHVVREENH SDSTRPFLSQ  180
LQRPIPSINF GLDASGNANF DNLDLALKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021804636.19e-34uncharacterized protein LOC110748960
TrEMBLA0A498I5531e-138A0A498I553_MALDO; Uncharacterized protein
STRINGEMJ256236e-37(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14890812