PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000800387
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 209aa    MW: 23258.1 Da    PI: 6.8991
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000800387genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.48.3e-10344439
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++++e++ fC  ++  lC+ C  ++H+       H++
  MDP0000800387  3 IRCDVCDKEEATVFCSADEAALCDVCDRQIHHAnklaskHKR 44
                   58****************************744477777775 PP
2zf-B_box26.61.2e-085592338
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    + C+ ++e +  lfC++++  lC++C l++Hk+  Ht
  MDP0000800387 55 SPLCDICQERRGFLFCQEDRAILCRECDLSIHKSneHT 92
                   689*******9*********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.562147IPR000315B-box-type zinc finger
PfamPF006433.5E-7344IPR000315B-box-type zinc finger
CDDcd000214.25E-7347No hitNo description
SMARTSM003369.7E-11447IPR000315B-box-type zinc finger
SMARTSM003363.8E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3153100IPR000315B-box-type zinc finger
PfamPF006431.7E-65592IPR000315B-box-type zinc finger
CDDcd000213.63E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKIRCDVCDK EEATVFCSAD EAALCDVCDR QIHHANKLAS KHKRFSLLHP TFKDSPLCDI  60
CQERRGFLFC QEDRAILCRE CDLSIHKSNE HTQKHSRFLL PGVKLSAASS LYPTSSACSN  120
FSEVMTAKTN DARASKSSTK RQRTVSSNEI LSSSSPSLME QTMSSSSYNK IEENYCFSDN  180
GSGSTSSISK YLMETLPGWH VEDLLDFS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382325.21e-143B-box zinc finger protein 20
SwissprotQ0IGM73e-71BBX20_ARATH; B-box zinc finger protein 20
TrEMBLM5W5I11e-105M5W5I1_PRUPE; Uncharacterized protein
STRINGXP_008382325.11e-152(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.14e-68DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]