PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000800974
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 590aa    MW: 66581.4 Da    PI: 4.9086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000800974genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07475532247
                      SSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqky 47 
                      +rWT+eE+++++d+vk   ++              W++ ++ ++ ++t+++++ +++++
    MDP0000800974 475 LRWTAEEEKRFKDLVKSNHSNspfiegnnsnsssFWDSASKWFP-RKTREDLVTYYFNV 532
                      79*****************99***********************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010145.1E-1147140No hitNo description
PROSITE profilePS5101118.20450144IPR001606ARID DNA-binding domain
SMARTSM005012.1E-1151145IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.6E-1454144IPR001606ARID DNA-binding domain
SuperFamilySSF467741.14E-1655144IPR001606ARID DNA-binding domain
PfamPF013882.1E-1056140IPR001606ARID DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAGWSSLTTG FVLDCVETTD TCQKDGVFPE INDVGSVKDG VDSDEGDQKG RLRCIFHQVL  60
AVFLKEVGDR DGVVRPVPAV IDDRQPVDLF KLFCVVKDRG GYDLVSNNSL WSFVAVELGV  120
DPEVMCSVKL IYFKYLNELE KWFTEICGTR SLGNGESGCK GNLHPLSSEL EREFRGLLSG  180
WPEQKGKSDG EVHLESGECN GDDDEKVCND DQNDVMISLS SLNKNENDRK RKRESLVGML  240
NWVGQIAKQP NDPSIGAIPE PTKWKEHRSD DECWVQAIRA KEALLIRRNV NSKTEEYLQQ  300
KKLKTHPLLF EDNIVAGRQC SGRLRCSERL PHSVKSRSCP CCHKKEVEND SVEQAPAEVD  360
LLATDTASED NPREKDVSVG AHAQADVPEW TGVASESDGK WLGTRVWPLK REEDSLPNET  420
DAIGQGRQDS CCCGFPDSVA CFRFHITEAK MKLKRELGSL FYNWRFDRMG EEVSLRWTAE  480
EEKRFKDLVK SNHSNSPFIE GNNSNSSSFW DSASKWFPRK TREDLVTYYF NVFLVQRRSY  540
QNRVTPKHID SDDDVTELGS LSNGFRRELV ELSTNSLPCS LNQKSTDFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375018.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like
RefseqXP_009375038.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like
TrEMBLA0A498I4B20.0A0A498I4B2_MALDO; Uncharacterized protein
STRINGXP_008392595.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF399678