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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
MDP0000802164 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 34924.5 Da PI: 10.0651 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000802164 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 361.2 | 2.1e-110 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77
mdd ++e r+k yy+ ++ ++l +++++ms+ia+rda+irern+al+ek++a+a+rd+a+ qrd+al++r+ al+er
MDP0000802164 1 MDDGRQHEngRHKMdYYRggvaspwnmmaqqqaKEpNALV--MNKKIMSIIADRDAAIRERNAALAEKNEALAARDEALRQRDEALTQRDSALMER 94
6776665558999889999999999999987653345666..99**************************************************** PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkse 172
dn+++al ++n+ + p g ++ +g+k ++ + + l+d + +++ +++ea+pi+ +ea +++++k+ k++k+++ak + kk +e
MDP0000802164 95 DNAYAALHSRDNA--VNFPLGGGAQRGAKRVQRPSN-HSVTLADVHYSTKDVHITEAYPISVISPEAVKSRQTKRA---KENKASRAKqSRKKVGE 184
*********9998..5678899999*******8877.789***************************999999944...44444444413344466 PP
GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
+ +++ ++++ + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++l
MDP0000802164 185 DLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGIPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTRL 278
7777766666..57********************************************************************************** PP
GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
L++Laa+G+dls p+DLk++WA+HGtn+++ti+
MDP0000802164 279 LSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 311
********************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDGRQHENG RHKMDYYRGG VASPWNMMAQ QQAKEPNALV MNKKIMSIIA DRDAAIRERN 60
AALAEKNEAL AARDEALRQR DEALTQRDSA LMERDNAYAA LHSRDNAVNF PLGGGAQRGA 120
KRVQRPSNHS VTLADVHYST KDVHITEAYP ISVISPEAVK SRQTKRAKEN KASRAKQSRK 180
KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VSFDESTMPV PVCSCTGIPR QCYKWGNGGW 240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS IPLDLKEYWA 300
RHGTNRYITI K*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
