PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000809337
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 584aa    MW: 64774.8 Da    PI: 6.3137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000809337genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.98.3e-1312135821373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cAea+s++d+   ++l+++ +  +s +g+p+ Rl ay++e+L ar   s+ ++y+al+++e +   s e l+++++++e++P+lkf++l
  MDP0000809337 213 LKQLLIACAEALSNNDMDSFEKLIEKARGAVSISGEPIXRLGAYLVEGLIARKEISGANIYHALRCREPE---SNELLSYMQILYEICPYLKFGYL 305
                    689*************************************************999**************9...99********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    +aN aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + +++++p+ef+  v     +++
  MDP0000809337 306 AANGAIAEACRNEDRIHIIDFQIAQGSQWVTLLQALAARPGGAPHVRITGIDDPLSKhaRGDGLEAVGRRLKAISDKFNIPVEFHG-VPVFSPNVT 400
                    *****************************************************98888899*************************.67788999* PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    l++L+v+pgEalaVn+ l+lh+++desv  +++rd +L++vksl+Pkv ++veqe+++n+++F++rf+ealeyy+a+f+s+++ lpr s+eri+vE
  MDP0000809337 401 LDMLDVRPGEALAVNFPLELHHTPDESVVENNPRDGLLRTVKSLNPKVTTLVEQESNTNTTPFFNRFVEALEYYMAMFESIDVALPRSSKERINVE 496
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +++l+r+ivnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+Lvs+SaW
  MDP0000809337 497 QHCLARDIVNVIACEGRERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIKSLLRCYS-EHYTLVERDGAMLLGWKDRNLVSASAW 582
                    *******************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.623187564IPR005202Transcription factor GRAS
PfamPF035142.9E-128213582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDQHVGFGAT GAGLSYTAPL PAVPSLRKRL LGSLKFDTRN SPNSPFLTHF DSDSLTTLSD  60
SQEQRSSSEN LSEATPSCTS SFETNSYVHQ LSLSPSVDCS RDGLQVYSGS TSALKDANSS  120
QNIKQTLQEL ESALMGPDDE EEEVTTPNAS IGESGRRQMQ RSMSWIQKHQ VSQPVQRQAS  180
FVSRQRQSGE VQIEKRHKVI DDASLKGLPA GNLKQLLIAC AEALSNNDMD SFEKLIEKAR  240
GAVSISGEPI XRLGAYLVEG LIARKEISGA NIYHALRCRE PESNELLSYM QILYEICPYL  300
KFGYLAANGA IAEACRNEDR IHIIDFQIAQ GSQWVTLLQA LAARPGGAPH VRITGIDDPL  360
SKHARGDGLE AVGRRLKAIS DKFNIPVEFH GVPVFSPNVT LDMLDVRPGE ALAVNFPLEL  420
HHTPDESVVE NNPRDGLLRT VKSLNPKVTT LVEQESNTNT TPFFNRFVEA LEYYMAMFES  480
IDVALPRSSK ERINVEQHCL ARDIVNVIAC EGRERVERHE LFGKWKSRFT MAGFRQYPLS  540
SYVNSVIKSL LRCYSEHYTL VERDGAMLLG WKDRNLVSAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6322058226378Protein SCARECROW
5b3h_A7e-6322058225377Protein SCARECROW
5b3h_D7e-6322058225377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.81910.0bud| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366473.20.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A498IND30.0A0A498IND3_MALDO; Uncharacterized protein
STRINGXP_008386036.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]