PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000817710
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 449aa    MW: 49599.7 Da    PI: 9.4731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000817710genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-05320361955
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r RR+r+ ++   L++llP++     kK++ a++  +A +YI+ Lq
  MDP0000817710 320 ARERRQRLSDKTRCLQKLLPWD-----KKMDSATTYGEAYKYIQFLQ 361
                    699******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.604311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-5317365No hitNo description
SMARTSM003531.4E-6317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-9317371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-7320368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MIATPRAPRV PSLRLPRNVP LIIYSHIRTG TLLRGEREMD ETETELRRAI RSLSGRADGG  60
GEKATACVTT GWDEEEATFN AIMSSGITFQ SFLPTTTSAP HHLQSPMLPS PPSLKPLPYS  120
DFAQDTFTNV SPATAAALDY SQVLRLAKHE PISNYQDYFP TPTFYDYPPD LNLLPTTHFS  180
PPPPRHLQHH DNESNDYSSI FQHLPDLLPL DPSNYFPCSS SSSSPYKRPR FVGSHHFCYP  240
SASFAAAVAT QHFHPHPPLP HFNNAPLFPP LNNYGFRTSS ASQSSSHANA PTPPPPPAPQ  300
VKTKRRITTP SPSLPGSALA RERRQRLSDK TRCLQKLLPW DKKMDSATTY GEAYKYIQFL  360
QAQLSALQTM PVLTPPTTSF ATSSVXGKLE RLSRNQLLQV LLNSPSAQTV MYSRGCCVFS  420
VEQLDQISRR FSHKMGSSTA SKSSPPSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953435.10.0uncharacterized protein LOC114822682
TrEMBLA0A498HG820.0A0A498HG82_MALDO; Uncharacterized protein
STRINGXP_008342102.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.15e-26bHLH family protein