PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000819543
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 437aa    MW: 48954.9 Da    PI: 5.1676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000819543genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.2e-16108197299
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +kv++ps v+    l l kkf +e++ k  ++ +++lede+g+++  k+ ++k++    l++GW++F  a+++k gD+v+F+l+  s+f  +v ++
  MDP0000819543 108 LKVMMPSEVSGGFYLNLAKKFRSEYMPK--QDSMIVLEDENGKEFGTKYLVEKGG----LSGGWRGFSIAHKIKKGDVVIFHLVTPSKF--KVYIV 195
                    69***********************744..6669***************666666....9**********************9987888..88887 PP

                    -S CS
             B3  98 rk 99 
                    r+
  MDP0000819543 196 RS 197
                    75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1999198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21100198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-21105196No hitNo description
PROSITE profilePS5086312.238107198IPR003340B3 DNA binding domain
SMARTSM010197.8E-17107198IPR003340B3 DNA binding domain
PfamPF023624.4E-13108197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEEAMVILQD QKQSSSYPLL QLPPPPPLHK GMETEKQFGQ KPPCFQPTTT SNVLNANANP  60
MMFKCPKRKA PVRVRVESLY DSSQAQSSVL ERAKKIEASL DDKFPSLLKV MMPSEVSGGF  120
YLNLAKKFRS EYMPKQDSMI VLEDENGKEF GTKYLVEKGG LSGGWRGFSI AHKIKKGDVV  180
IFHLVTPSKF KVYIVRSNEV DWSIPLMRVD PPIRQMDTGG FTACGKEERE NLEPNPQENA  240
IVCYTDSGPT SDQSGNDGED VGSEFLDGLR LSESVVTFKE VHCLDNFNVQ VNGLIINSEF  300
SKYVLTKYYE LCCSQKSFLH EQLLEGLNCK LIAGVISETV NIADAIRACK ITTPEDYLST  360
WDKTLKAFGD LGMNVRFLRA RLDQLTSLAS KSKRLEANVL EVKETMNSLD SEVETPNTSL  420
EEEREIPFQE MAKAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373165.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498JX930.0A0A498JX93_MALDO; Uncharacterized protein
STRINGXP_008373165.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-33B3 family protein