PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000824178
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 563aa    MW: 62142.2 Da    PI: 9.3057
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000824178genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-11270326155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e Aa+a++ a++k++g
  MDP0000824178 270 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEERAARAYDLAALKYWG 326
                    78*******************433.44555535555.779999**************98 PP
2AP248.12.9e-15369420155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MDP0000824178 369 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 420
                    78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.98E-18270336No hitNo description
PfamPF008471.9E-8270326IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-14270336IPR016177DNA-binding domain
SMARTSM003804.9E-22271340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-12271335IPR001471AP2/ERF domain
PROSITE profilePS5103217.187271334IPR001471AP2/ERF domain
PRINTSPR003671.0E-6272283IPR001471AP2/ERF domain
CDDcd000188.72E-24369430No hitNo description
PfamPF008475.7E-10369420IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18369430IPR016177DNA-binding domain
SMARTSM003806.7E-34370434IPR001471AP2/ERF domain
PROSITE profilePS5103219.006370428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18370429IPR001471AP2/ERF domain
PRINTSPR003671.0E-6410430IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSNWLGFSLA PHLRIHEGFG GREEEQEHVG GGGFSSEMTI MPLRSDGSLC VSADPFSRSN  60
GSEVFSYDLY NFWKIGDMRT KWVQQVRQLQ TQTKTVQSLK ISWAAATPAL LLQLMKPKPT  120
TSTPSKTKTK THPSPKSTST SLPNFTTTTP SNGEIEPSRD RFINNQPYTH YCNTLNPAQS  180
LVPSNGMYKS WLGQTLPFCD EKSLCGGDHQ SALSLTMCPS LQNGNNNNNM GVISHQQIQI  240
VDNKKRAVGK SPAREPVPRK SLDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR  300
KGRQGGYDKE ERAARAYDLA ALKYWGSTTH INFPLSTYEK ELEEMKNMTR QEFVANLRRK  360
SSGFSRGASV YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG  420
TSAVTNFDMS RYDVKRICSS STLIASDLAK RSPKDSAPPA AAIEDFNSCA SSTSPHPLLA  480
ITSGGEPSDD LADMMWNNAA EDHSNTNAPL GASSPKSHEF GIGGGDYSHA YFSAGNNGGT  540
DHSRLGNLGL VQQVPMFALW ND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391390.20.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A498J5V90.0A0A498J5V9_MALDO; Uncharacterized protein
STRINGXP_008391390.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-123AP2 family protein