PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000824506
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 87aa    MW: 9862.23 Da    PI: 7.336
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000824506genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-0659711426
                   --TTTTT-SS-SS CS
        zf-CCCH 14 tCkyGdrCkFaHg 26
                   tC++G  C+F+H+
  MDP0000824506 59 TCSRGTACNFIHC 71
                   8***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549281.88E-8546IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3303.0E-11546IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.1E-61032IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.1E-66375IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MEYLCQVCRN GAFHLRGNVY IHYKSMDSAV VAYQSVNGRY FAGKQMEGCH MRGIYEVETC  60
SRGTACNFIH CFRNPGGDYE WADMLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950772.15e-38zinc finger CCCH domain-containing protein 5
SwissprotQ9SY745e-35C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A498HRR48e-37A0A498HRR4_MALDO; Uncharacterized protein
STRINGXP_009362161.13e-38(Pyrus x bretschneideri)
STRINGXP_008363366.11e-37(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.12e-37C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]