PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000824792
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 340aa    MW: 37873.6 Da    PI: 10.0228
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000824792genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.7e-103180244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrw 44
                      +W t+E++ll++avk++G ++W+t+a +++       +  t+ +c +++
    MDP0000824792 31 SSWGTWEELLLACAVKRHGVHDWDTVAMELQaktslppLLTTASNCNLKY 80
                     57*****************************7666666555666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00542986IPR001005SANT/Myb domain
PfamPF002491.4E-83182IPR001005SANT/Myb domain
CDDcd001679.46E-53365No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MKGGAAADTP SFNNNNNNIT TTSDQTTTST SSWGTWEELL LACAVKRHGV HDWDTVAMEL  60
QAKTSLPPLL TTASNCNLKY LDLSRRFHSR HQNDDVHHDP HNNNTTNIPW LDDLRKLRVA  120
QLRQELHGYD VSIVXRGWRR REKTASKTTT PNQIWRRRSS RTPIGTDQKT TKQFEANRGK  180
PDHENQSVNG SNSTCSKNLD HDNKPGPGDR ALSEPGPLSA CSDEPSKKTG SGQSDSDSDK  240
GSSETVAKKR RVRGRQGKGG GDSAGELRES SEVQSSVSLT KKRNGKRHRR MEVPEQQHNN  300
EDVSLVKSEP LIEVLQLIRA QEHASLFERR LSAQVFLLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6532250.0AY653225.1 Malus x domestica TFCR (TFCR) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502620.11e-177PREDICTED: uncharacterized protein LOC103945928
TrEMBLA0A498JE581e-173A0A498JE58_MALDO; Uncharacterized protein
STRINGXP_009354803.11e-172(Pyrus x bretschneideri)
STRINGXP_008356758.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-31DNA-binding bromodomain-containing protein