PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000825602
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 147aa    MW: 16460.9 Da    PI: 5.9094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000825602genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-1431120295
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                    + +  +++v  s ++v+p kf  +    + +s   t+ +  g+ We+++  +++s +  +  +W+eFv++n+Lk+gD +vF+l   + ++  ++v+
  MDP0000825602  31 EVIIRKANVKPSYQMVIPAKFQPTL---PSCS-IPTVLTFGGKNWEMTY--TGGSIQRKFDINWREFVNDNNLKVGDACVFELLeCSsTKLAFRVQ 120
                    4555667778888999999997555...3344.4577889*********..999999999999*******************76243344444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-1625120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-1625123IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-1828123No hitNo description
PfamPF023622.7E-1230118IPR003340B3 DNA binding domain
SMARTSM010190.001130125IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98430125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MGDQRHQPTS NPTIELQGDE FWPLSKKPFF EVIIRKANVK PSYQMVIPAK FQPTLPSCSI  60
PTVLTFGGKN WEMTYTGGSI QRKFDINWRE FVNDNNLKVG DACVFELLEC SSTKLAFRVQ  120
ILRGDIPSEL LGNLKGDTVD APIIID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188821.11e-106B3 domain-containing protein Os04g0386900-like isoform X2
RefseqXP_028961285.11e-105B3 domain-containing protein Os04g0386900-like isoform X1
RefseqXP_028961286.11e-106B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBLA0A498JBT71e-102A0A498JBT7_MALDO; Uncharacterized protein
STRINGXP_008345126.12e-87(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-09related to vernalization1 1