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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000826219 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 291aa MW: 31938.9 Da PI: 10.0581 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000826219 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 342 | 1.5e-104 | 12 | 290 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnklla 83
mddd+ + rn+gyyep+ +k +l+lqlmss+aerd k+ r+ + + + ++a+++rd m++ +r++++++ ++k+l+
MDP0000826219 12 MDDDALNMRNWGYYEPS--FKGHLSLQLMSSMAERDIKPfapgRDPAV-MVSANGAYHPRDcvvsdaqlpMNY-MRESWVNQ--------RDKFLN 95
9***9999*******99..********************9*9999998.999*********999999999999.88899998........78999* PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
+++ a+p++ vl++t+ ++slq l+++ + e+ e++ + ke ++kkrq + pk++kakk++k +k++ +
MDP0000826219 96 MMP-------ANPNYAAVLPETSGAHSLQI-----LQPPEASRDERVGR-----MEEPVVPKEGGTSKKRQGGGAPKAPKAKKPRK----PKDN-A 169
999.......468899**********9999.....55554442222222.....23455566777777888889999999998888....3333.4 PP
GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275
++s+ +r+k kks+d+v+ng+++D+s++P+PvCsCtGa +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae
MDP0000826219 170 NPSV-PRVKPAKKSLDVVINGINMDISGIPIPVCSCTGAAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAE 264
4443.79***************************************************************************************** PP
GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301
Gy+++np+DL++hWAkHGtnkfvt+r
MDP0000826219 265 GYNFANPIDLRSHWAKHGTNKFVTLR 290
************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MFVCLVESVA LMDDDALNMR NWGYYEPSFK GHLSLQLMSS MAERDIKPFA PGRDPAVMVS 60
ANGAYHPRDC VVSDAQLPMN YMRESWVNQR DKFLNMMPAN PNYAAVLPET SGAHSLQILQ 120
PPEASRDERV GRMEEPVVPK EGGTSKKRQG GGAPKAPKAK KPRKPKDNAN PSVPRVKPAK 180
KSLDVVINGI NMDISGIPIP VCSCTGAAQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR 240
GARIAGRKMS QGAFKKVLEK LAAEGYNFAN PIDLRSHWAK HGTNKFVTLR *
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM244747 | 0.0 | KM244747.1 Malus hupehensis basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
| GenBank | KP657685 | 0.0 | KP657685.1 Malus baccata basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
