PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000827871
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 443aa    MW: 49036.5 Da    PI: 5.1523
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000827871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.13.1e-89474312373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfsh 95 
                    ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++ +++ ++   +s+t ++  s+ +++++l  ++++ P+++f++
  MDP0000827871  47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVCPTPMNFNGSSST-STIPSRLMSVTELagYVDLIPWHRFGY 141
                    689***************************************************88887765544444.345566666666689************ PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.vak.rl 186
                     + N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+Rpegpp lR+ + +   ++    + + ee+g rL +f +  +vpfefnv+   + +l
  MDP0000827871 142 CASNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRPEGPPLLRVSVPNWRPQVpplLNVSSEEVGLRLGNFSRFRDVPFEFNVIeN-SsSL 236
                    *************************************************9988755558899999***********************962.3244 PP

           GRAS 187 edl.....eleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                    e l     ++++L+++++E+l+Vn++  l +l de+  ++       r+++L++++sl+P+++vvv++++d++++s+  r++ +++y +  fdsl+
  MDP0000827871 237 ELLvtselNPSSLDLREDEVLVVNCQNWLRYLSDEPXGTPGhqdgsMRNTFLNTIRSLNPRIIVVVDEDSDLSAPSLTSRITTCFNYLWIPFDSLD 332
                    4433333399999********************9887766544455788*********************************************** PP

           GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                    + lp++s +r+ +E   +g +i+n++  eg +r+er e+  + ++rl++ GF++  + e++a ++k+ll +++  g+ ++ e++ lvl+Wk+++ v
  MDP0000827871 333 TFLPKDSTQRMDYESD-VGHKIENIIGFEGHKRIERLESGVTMSQRLRNIGFSSTIFCEETAREVKALLDEHA-SGWGMKREEDMLVLTWKGHNSV 426
                    ****************.********************************************************.889999999************* PP

           GRAS 369 svSaW 373
                    +++aW
  MDP0000827871 427 FATAW 431
                    ***** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.79120413IPR005202Transcription factor GRAS
PfamPF035141.1E-8647431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MKTEVRGSIT SISLQNPSTA LFNTSQGTSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VCPTPMNFNG SSSTSTIPSR  120
LMSVTELAGY VDLIPWHRFG YCASNSAIFK AIQGCPKVHI LDFSITHCMQ WPTLIDALAK  180
RPEGPPLLRV SVPNWRPQVP PLLNVSSEEV GLRLGNFSRF RDVPFEFNVI ENSSSLELLV  240
TSELNPSSLD LREDEVLVVN CQNWLRYLSD EPXGTPGHQD GSMRNTFLNT IRSLNPRIIV  300
VVDEDSDLSA PSLTSRITTC FNYLWIPFDS LDTFLPKDST QRMDYESDVG HKIENIIGFE  360
GHKRIERLES GVTMSQRLRN IGFSSTIFCE ETAREVKALL DEHASGWGMK REEDMLVLTW  420
KGHNSVFATA WVPNPNGLLI ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-604043327420Protein SHORT-ROOT
5b3h_E3e-604043327420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341966.20.0scarecrow-like protein 32
TrEMBLA0A498HB600.0A0A498HB60_MALDO; Uncharacterized protein
STRINGXP_008341966.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein