PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000835180

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 489aa MW: 54005.8 Da PI: 4.4169

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000835180	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.4	8.6e-34	23	147	4	127
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +rFhPt+ee+ ++L kk++g++ ++ + ++ +d++k+ePwdLp+ ++ + k wy Fs+ d ky ++ r nr+t++g+Wk tgk +++ s MDP0000835180 23 AIRFHPTEEEMA-DFLWKKMKGHNSQACHSLPVIDVCKFEPWDLPErmfpDTRYQAKAWYSFSQPDYKYINSPRCNRITEKGFWKITGKPRDISS- 116 58******99.9******999899**********9546664455788********************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 ++++ k+tL+fykgr +k+e+t Wvmhey MDP0000835180 117 -THVTCKKRTLTFYKGRVSKSERTGWVMHEYY 147 .77888999********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-35	13	175	IPR003441	NAC domain
PROSITE profile	PS51005	35.098	20	175	IPR003441	NAC domain
Pfam	PF02365	2.0E-14	24	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MGNISSSTAT STTGQSVPDM VLAIRFHPTE EEMADFLWKK MKGHNSQACH SLPVIDVCKF 60 EPWDLPERMF PDTRYQAKAW YSFSQPDYKY INSPRCNRIT EKGFWKITGK PRDISSTHVT 120 CKKRTLTFYK GRVSKSERTG WVMHEYYFTK PKQGSNTSQG RDPLRDFVLY RLKKKPANSM 180 SDNKNLQDTL IGDDLTDPGN GSCIASSSGN DQAATAAALN HDMTPAAEEL LAXQELEDDL 240 FDSGNHDRGE PGGGISSDST DQVLRDMIQQ PPQPPQLGNA PDVCSDEFVD PSTGGCITCN 300 TDNQDAAMNH MISAEEEILA YKQLERALLG NGDHDDGEPG SGGSSDFNDQ AVDDMILELS 360 AELQKDSDSP FPPXEPSQTI QPHQLGDAAD VHSGKFSNCP SPTNYDNESV INIVYNSQNR 420 ATSERISEAY SQREENRESP FQPFDHYPLQ SPLFSSELGE LMLANTYIGG NESQSLNIEP 480 ATLFPQSS*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MGNISSSTAT STTGQSVPDM VLAIRFHPTE EEMADFLWKK MKGHNSQACH SLPVIDVCKF  60
EPWDLPERMF PDTRYQAKAW YSFSQPDYKY INSPRCNRIT EKGFWKITGK PRDISSTHVT  120
CKKRTLTFYK GRVSKSERTG WVMHEYYFTK PKQGSNTSQG RDPLRDFVLY RLKKKPANSM  180
SDNKNLQDTL IGDDLTDPGN GSCIASSSGN DQAATAAALN HDMTPAAEEL LAXQELEDDL  240
FDSGNHDRGE PGGGISSDST DQVLRDMIQQ PPQPPQLGNA PDVCSDEFVD PSTGGCITCN  300
TDNQDAAMNH MISAEEEILA YKQLERALLG NGDHDDGEPG SGGSSDFNDQ AVDDMILELS  360
AELQKDSDSP FPPXEPSQTI QPHQLGDAAD VHSGKFSNCP SPTNYDNESV INIVYNSQNR  420
ATSERISEAY SQREENRESP FQPFDHYPLQ SPLFSSELGE LMLANTYIGG NESQSLNIEP  480
ATLFPQSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	23	179	20	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	23	179	20	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	23	179	20	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	23	179	20	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	23	179	23	172	NAC domain-containing protein 19
3swm_B	1e-22	23	179	23	172	NAC domain-containing protein 19
3swm_C	1e-22	23	179	23	172	NAC domain-containing protein 19
3swm_D	1e-22	23	179	23	172	NAC domain-containing protein 19
3swp_A	1e-22	23	179	23	172	NAC domain-containing protein 19
3swp_B	1e-22	23	179	23	172	NAC domain-containing protein 19
3swp_C	1e-22	23	179	23	172	NAC domain-containing protein 19
3swp_D	1e-22	23	179	23	172	NAC domain-containing protein 19
4dul_A	1e-22	23	179	20	169	NAC domain-containing protein 19
4dul_B	1e-22	23	179	20	169	NAC domain-containing protein 19

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8510	1e-68	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376032.1	0.0	PREDICTED: NAC domain-containing protein 62-like isoform X1
Refseq	XP_018507299.1	0.0	PREDICTED: NAC domain-containing protein 62-like isoform X1
TrEMBL	A0A498JK55	0.0	A0A498JK55_MALDO; Uncharacterized protein
STRING	XP_009376032.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18876	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	3e-30	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	MDP0000835180