PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000842644
Common NameAP2D19
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 234aa    MW: 26389 Da    PI: 5.1904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000842644genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-18131181255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp     k +r++lg+f+t  +Aaka++ a+ kl+g
  MDP0000842644 131 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 181
                    7********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.86E-30131189No hitNo description
SMARTSM003808.4E-36131195IPR001471AP2/ERF domain
PROSITE profilePS5103224.526131189IPR001471AP2/ERF domain
PfamPF008471.2E-12131181IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23131190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-31131190IPR001471AP2/ERF domain
PRINTSPR003673.5E-13132143IPR001471AP2/ERF domain
PRINTSPR003673.5E-13171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSTHEQDDST LXLIRQHLLX DFTFTDSFIS HLNFEITPDD ISYFEFQPVK PEYSSLSESG  60
SSSPISTPNY HSPQLSNSET KPESVNLPSM EVEPLNLSSQ CSPKRKYXTC QTSSSKDELQ  120
QVSGSGDVLX HYRGVRRRPW GKYAAEIRDP ARKGTRVWLG TFDTDVDAAK AYDCAAFKLR  180
GRKAILNFPL EAGLSEPPVN TXRKRRRSVK QEEVTETEEL ELQSWVVWEG EGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28131190261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-28131196570ATERF1
3gcc_A4e-28131196570ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
2202207RKRRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304120.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324430.0GU732443.1 Malus x domestica AP2 domain class transcription factor (AP2D19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362711.11e-150PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLA0A4D5XFE71e-149A0A4D5XFE7_9ROSA; Ethylene Responsive Factor ERF106
STRINGXP_008343686.11e-168(Malus domestica)
STRINGXP_008375671.11e-168(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-42ERF family protein
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]