PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000842702
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 267aa    MW: 30763.8 Da    PI: 9.5894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000842702genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.3e-34161541128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    +p+G+rF+Ptdeelv +yL +kv++ +l++ ++i+e+d+++++Pw Lp  +  +e++++f+ ++ +ky  g +++ra+  gyWk  gk+k+++++ 
  MDP0000842702  16 MPVGYRFRPTDEELVIHYLMRKVHAAPLPA-SIIPEFDVFETHPWGLPGDI--RETRYFFYNENMNKY-VGINSKRAAGCGYWKPIGKKKQIVANs 107
                    699***************************.89***************554..445555555555555.79**********************986 PP

            NAM  96 .kgelvglkktLvfy.............kgrapkgektdWvmheyrl 128
                     ++e+vg++ktL f              + +++++++t+W+mheyrl
  MDP0000842702 108 kSNEAVGIRKTLGFCerkrrrchnhyheSTSTSTTTQTRWLMHEYRL 154
                    67778**********777766666555436777888*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-398180IPR003441NAC domain
PROSITE profilePS5100538.93316180IPR003441NAC domain
PfamPF023656.6E-2217154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MENIKENYVI YGGVKMPVGY RFRPTDEELV IHYLMRKVHA APLPASIIPE FDVFETHPWG  60
LPGDIRETRY FFYNENMNKY VGINSKRAAG CGYWKPIGKK KQIVANSKSN EAVGIRKTLG  120
FCERKRRRCH NHYHESTSTS TTTQTRWLMH EYRLLACQAN PTQAFKAEVG NWVVFRIFQK  180
KRRPTQRISD DMGVVSQRSS NCKRNRRLME EYISAADHRS RRSDPDLTTL SSPSCSSDIT  240
HELTSNDNGE LDDDQEGHSV SVRINI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-221418113169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79220.0bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341263.20.0NAC domain-containing protein 83-like
TrEMBLA0A498HF840.0A0A498HF84_MALDO; Uncharacterized protein
STRINGXP_008341263.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-42NAC domain containing protein 83