PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000846736

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 220aa MW: 25092.3 Da PI: 6.5809

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000846736	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.9e-27	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++ GF+vr++++++s+ n++i+ ++fvCskeg+r+++ +++++ + ++tr gC+a++++ +++ kw+vtk+++eHnH+l+ MDP0000846736 77 EFYVAYGRRSGFTVRIHHNRRSRVNNQIIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPVTREGCQAMIRLALRDGPKWVVTKFVKEHNHKLM 167 6****************************************99883332.245899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-24	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDHESNHGFD SDESDLDVHA ETYEHNEGIQ GVLPENLDLC VDEKEETEEQ SADLPMNVEA 60 LEPYIGMEFN SRDEAREFYV AYGRRSGFTV RIHHNRRSRV NNQIIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPVTREGCQ AMIRLALRDG PKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LASESCAYCY QALVQAWNHL ALAVKLKLNI PCSLYEAVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369148.1	1e-137	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	M5XFI8	1e-122	M5XFI8_PRUPE; Uncharacterized protein
STRING	XP_008369148.1	1e-137	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-27	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000846736