PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000851699

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 141aa MW: 16219.1 Da PI: 5.2927

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000851699	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.7e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p +++++eL+++l +++e++V++WFqNrRa+ k+ MDP0000851699 22 RQRWTPSPVQLQILEQIFEEgNGTPCKQKIKELTMELtqhgQISETNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	98.7	4.6e-32	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++++G tP k++i+++t+eL+++G+i+++NV++WFQNr+aR+++kq MDP0000851699 21 SRQRWTPSPVQLQILEQIFEEGNGTPCKQKIKELTMELTQHGQISETNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-19	16	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.787	18	83	IPR001356	Homeobox domain
SMART	SM00389	2.2E-13	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-19	20	86	IPR009057	Homeodomain-like
CDD	cd00086	2.22E-13	22	84	No hit	No description
Pfam	PF00046	2.9E-19	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MRLGNFYCDP FMASGGHKIT SRQRWTPSPV QLQILEQIFE EGNGTPCKQK IKELTMELTQ 60 HGQISETNVY NWFQNRRARS KRKQSMTAQN NAESEAEPEV ESPRDEKTKP EDILSFDNSA 120 LRAENMYLQS PELGFGNFDW *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23461	0.0	cell culture\| fruit\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008356422.1	1e-102	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	3e-52	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A498JSL3	1e-101	A0A498JSL3_MALDO; Uncharacterized protein
STRING	XP_008346451.1	1e-102	(Malus domestica)
STRING	XP_008356422.1	1e-102	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-44	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	MDP0000851699

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]