PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000859087
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 569aa    MW: 63226.8 Da    PI: 4.7709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000859087genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.63.1e-1391995682374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL+ecA a+s+g+ e+a++++++l++++s +gdp+qR+aay++e+Laar+a+s++ lyk+l+++e +   ss  laa+++++ev+P++kf++++
  MDP0000859087 199 KQLLFECAGALSEGNVEEASTMINELRQMVSIQGDPTQRIAAYMVEGLAARVASSGKFLYKSLKCKEPP---SSYLLAAMQILFEVCPCFKFGFMA 291
                    589*****************************************************************9...99********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI ea + e+rvHiiDfdi+qG Q+++L+q+L+s p++pp+l++Tgv++pe++  +   l+ +g+rL+k+Ae+l+vpfef++ va+r++ +++
  MDP0000859087 292 ANGAIIEACKDEKRVHIIDFDINQGNQYITLIQTLSSLPGKPPHLKLTGVDDPETVqrHVGGLKIIGQRLEKLAEALKVPFEFHA-VASRTSIVNT 386
                    ******************************************************99888999***********************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L ++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+fdsl+a lpres++r++vEr
  MDP0000859087 387 SMLGCRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDMNTNTTPFLPRFVEAYNYYSAVFDSLDAALPRESQDRMNVER 482
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l r+++++ y+v+ee g+l +gW++++L+++SaWr
  MDP0000859087 483 QCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSVTDSIRDLSRRYSER-YKVKEEAGALHFGWEEKNLIVASAWR 568
                    **********************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.947172549IPR005202Transcription factor GRAS
PfamPF035141.1E-136199568IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSLVRPSELS TSYRNPNFYS LKGSNDSSSL STQIFGSDKH KVVYSDDPYS TESYEKYFLD  60
SPMEEDTHPS NSGVSGSSTN PQGASSYQLT AGSVSSLNTQ NPFSTSLMSN FESDYLESQS  120
PDADSFDEDK MRLKLKELER ALLDDNADED DGEINCSSQS MEVDELFHDS PKESSSSDSN  180
ASSISSNKEI SQVSPRTPKQ LLFECAGALS EGNVEEASTM INELRQMVSI QGDPTQRIAA  240
YMVEGLAARV ASSGKFLYKS LKCKEPPSSY LLAAMQILFE VCPCFKFGFM AANGAIIEAC  300
KDEKRVHIID FDINQGNQYI TLIQTLSSLP GKPPHLKLTG VDDPETVQRH VGGLKIIGQR  360
LEKLAEALKV PFEFHAVASR TSIVNTSMLG CRPGEALVVN FAFQLHHMPD ESVSTVNQRD  420
QLLRMVKSLR PKLVTVVEQD MNTNTTPFLP RFVEAYNYYS AVFDSLDAAL PRESQDRMNV  480
ERQCLARDIV NIVACEGEER IERYEVAGKW RARMTMAGFT SCPMSTSVTD SIRDLSRRYS  540
ERYKVKEEAG ALHFGWEEKN LIVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6620456724377Protein SCARECROW
5b3h_D1e-6620456724377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.10890.0fruit| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344600.20.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A498JVV40.0A0A498JVV4_MALDO; Uncharacterized protein
STRINGXP_008344600.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]