PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000866008
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 151aa    MW: 17107.9 Da    PI: 9.5538
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000866008genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-09801023456
                    HHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  34 AkklgLterqVkvWFqNrRakek 56 
                    Ak lgL+ rqV +WFqNr a++k
  MDP0000866008  80 AKDLGLQPRQVAIWFQNRWARWK 102
                    899*******************9 PP
2HD-ZIP_I/II80.23.2e-26801373390
    HD-ZIP_I/II  33 areLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    a++Lglqprqva+WFqnr AR+ktk+lEkdye+L+++y++lk++ e+L+ke+++L++e
  MDP0000866008  80 AKDLGLQPRQVAIWFQNRWARWKTKHLEKDYEVLQANYNNLKANCENLSKENDKLKAE 137
                    99*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000867.09E-680105No hitNo description
PROSITE profilePS5007110.10680104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-980111IPR009057Homeodomain-like
PfamPF000469.0E-780102IPR001356Homeobox domain
SuperFamilySSF466893.72E-880116IPR009057Homeodomain-like
PfamPF021839.1E-12104137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAGERVNGXR NSSVLSALLQ NQRSSEPLDS LFLSRSSTSS FAHFLGSRLK MYVEEVDRIG  60
HCSTSMSTKI TGKMTWENPA KDLGLQPRQV AIWFQNRWAR WKTKHLEKDY EVLQANYNNL  120
KANCENLSKE NDKLKAEQHQ AAGESDAGRW *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25941e-71bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346529.12e-54homeobox-leucine zipper protein HAT5-like
TrEMBLA0A498HX632e-42A0A498HX63_MALDO; Uncharacterized protein
TrEMBLA0A498KPY66e-42A0A498KPY6_MALDO; Uncharacterized protein
STRINGXP_008357588.11e-108(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-21homeobox 1