PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000868578
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 324aa    MW: 36000.5 Da    PI: 7.9445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000868578genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw++yl
    MDP0000868578 15 RGPWTPEEDRKLLAYIQLHGHGSWRSLPQKAGLKRCGKSCRLRWRNYL 62
                     89*********************************************7 PP
2Myb_DNA-binding53.36.6e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
    MDP0000868578  68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-RRTDNEVKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4651062IPR017930Myb domain
SuperFamilySSF466896.34E-3112109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-241265IPR009057Homeodomain-like
SMARTSM007172.4E-151464IPR001005SANT/Myb domain
PfamPF002492.2E-171562IPR001005SANT/Myb domain
CDDcd001674.64E-121762No hitNo description
PROSITE profilePS5129425.30663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2666117IPR009057Homeodomain-like
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002492.5E-1568113IPR001005SANT/Myb domain
CDDcd001679.87E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGKSSCYAAA SGIKRGPWTP EEDRKLLAYI QLHGHGSWRS LPQKAGLKRC GKSCRLRWRN  60
YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPRR TDNEVKNYWN THLKKRLAKI  120
GFDPVTHKPK AAILGSANGD PKNWSNLSHI AQWESARLQA EARFVKESKL RMLESAPAPS  180
LSDEHHQFAP PLVPQCLDIL RASAWESLIS MSRSSSRSAA LTNMNGQGNV SFGDHHHVND  240
HGINMNAQDY GSNFEAPTSD QQLSSLMGYD DAALMSSVAT GSMNINELFG EYCGDECSEL  300
LPALHHDTGF EFGDAWTSLE QLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26151177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374564.10.0transcription factor MYB106-like
SwissprotQ9LE631e-90MY106_ARATH; Transcription factor MYB106
TrEMBLA0A498JMW90.0A0A498JMW9_MALDO; Uncharacterized protein
STRINGXP_008374564.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-91myb domain protein 16