PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000868587
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 255aa    MW: 27710.5 Da    PI: 10.4097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000868587genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-192474155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa a+++a+++++g
  MDP0000868587 24 TRFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAACAYDKAAREFRG 74
                   589*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.22E-292482No hitNo description
PfamPF008471.9E-122474IPR001471AP2/ERF domain
PROSITE profilePS5103223.132582IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-312582IPR001471AP2/ERF domain
SMARTSM003809.5E-372588IPR001471AP2/ERF domain
PRINTSPR003671.9E-102637IPR001471AP2/ERF domain
PRINTSPR003671.9E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPTTEKSPP KSGSEDPNPT SNETRFRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE  60
AACAYDKAAR EFRGGKAKTN FPTPTELHLD AVNIANMNNA AKLAATTNIS NSPSSHSSTV  120
ESSSPPSPRP LDLTLKTPRL STGGGYFTAA SGFRPLPASR PVIFFDAFAR ADSTATLQHA  180
RETCRFDPPA PTSGSGHSDS SSSSVVDFER TSRNGLLDLD LNLPPPLRSR LNYRRPPRKI  240
PXFXFPVQVC SFFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-202682360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-202682663ATERF1
3gcc_A8e-202682663ATERF1
5wx9_A3e-1921871077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302660.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324810.0GU732481.1 Malus x domestica AP2 domain class transcription factor (AP2D57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315724.11e-162ethylene-responsive transcription factor 4-like
TrEMBLD5L1411e-161D5L141_MALDO; AP2 domain class transcription factor
STRINGXP_008349999.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-25ethylene responsive element binding factor 4