PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000871273

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 292aa MW: 33041.9 Da PI: 9.9585

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000871273	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.1	1.4e-19	33	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ +Li+a++e++ +lrrg+lk +Weev+ + + + ++s++qC++k+e+l++r++++k++ ++rt +s +p+f+ +e MDP0000871273 33 WSQEETVQLIRAYQEKWYALRRGQLKSXQWEEVAVTVaarcgyEYGXPSKSATQCRHKMEKLRQRHRAVKKRLGQRT---KSGWPFFELME 120 **********************************99777744445589********************984...457***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	32	95	IPR017877	Myb-like domain
Pfam	PF13837	3.1E-19	32	122	No hit	No description
SMART	SM00595	1.4E-4	40	127	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSTPPPPSPT ASXKASVSAS PMATAKKPHP LPWSQEETVQ LIRAYQEKWY ALRRGQLKSX 60 QWEEVAVTVA ARCGYEYGXP SKSATQCRHK MEKLRQRHRA VKKRLGQRTK SGWPFFELME 120 QMERGPMPIS AMPMAEMPHQ QEEEEERDYH GGGGGGHEDD DEENSNKVRS IDFILRRPTF 180 VNRFSGKASF LQGPAAAAEL KRGREAVGGG DVVEPPEQRG REMVVELADE MRAFAQQLMG 240 VEKRRMKMMK ETERYRVEME KRRISMILQS QQKIVDSINT AFGSSNKLSS S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008372626.3	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A498JQL0	0.0	A0A498JQL0_MALDO; Uncharacterized protein
STRING	XP_008372626.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	2e-52	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000871273