PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000872821
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 187aa    MW: 21216.2 Da    PI: 9.6437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000872821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
    MDP0000872821 13 KGAWSKQEDQKLIDYIQKHGEGCWNSLPHAAGLSRCGKSCRLRWINYL 60
                     79********************************************97 PP
2Myb_DNA-binding482.8e-1571110647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
    MDP0000872821  71 EDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTH 110
                      89***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22462IPR009057Homeodomain-like
PROSITE profilePS5129415.935860IPR017930Myb domain
SuperFamilySSF466891.24E-2810107IPR009057Homeodomain-like
SMARTSM007171.9E-141262IPR001005SANT/Myb domain
PfamPF002492.5E-161360IPR001005SANT/Myb domain
CDDcd001673.56E-111560No hitNo description
PROSITE profilePS5129424.13861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2463115IPR009057Homeodomain-like
SMARTSM007172.9E-1465113IPR001005SANT/Myb domain
CDDcd001673.94E-1171111No hitNo description
PfamPF002498.0E-1471110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRKPCYEKYE INKGAWSKQE DQKLIDYIQK HGEGCWNSLP HAAGLSRCGK SCRLRWINYL  60
RPDLKRESIR EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH IRKKLLKMGS  120
TLDPKKPHHH NDPHLRKGTT ATVPLLQPDT SSPISFALSS SDSMSTGAEI HSNKSGLPDL  180
NLDLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-301011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.296040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374825.11e-136transcription repressor MYB6-like
RefseqXP_028959941.11e-136transcription repressor MYB6-like
SwissprotP813933e-66MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A498JL091e-122A0A498JL09_MALDO; Uncharacterized protein
STRINGXP_008374825.11e-135(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-66myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]