PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000875621
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 322aa    MW: 35277.6 Da    PI: 9.6438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000875621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
    MDP0000875621 132 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 176
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.284125181IPR017930Myb domain
SuperFamilySSF466891.2E-17126182IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-18128180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.1E-11129175IPR009057Homeodomain-like
SMARTSM007172.8E-9129179IPR001005SANT/Myb domain
PfamPF002491.1E-10132176IPR001005SANT/Myb domain
CDDcd001671.48E-8132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCAN FRGTTSSTSF VGFRLFGVQL HHDHDHHIMM SSSNMNNNSA  60
NYHVSMPMKK SFSMDCLPTT TSSASSSSPS NSSLSPSRLS MDENICASDK ASIGYLSDGL  120
ICRAQERKKG VPWTEEEHRT FLIGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ  180
ASLTKKKRRS SLFDMFGSSN NINMETDDPI PTQRDNIIRN NMAIDSSTVP LLEHSIAAKN  240
LNLDHSQKPH SSSTTTRQLP VWIYELTDSQ MKPNSSSSKA SVVPDLELTL AAPTSPNVEQ  300
KNKSSPSPAG PLLNLGTISV T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.267370.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387730.10.0transcription factor KUA1-like
TrEMBLA0A498KD060.0A0A498KD06_MALDO; Uncharacterized protein
STRINGXP_008387730.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-55MYB_related family protein