PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000880188
Common NameSUP11
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 202aa    MW: 22663.9 Da    PI: 6.7418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000880188genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-053355123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ Fs+   L  H++ H
  MDP0000880188 33 YECNFCKRGFSNAQALGGHMNIH 55
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-73060No hitNo description
Gene3DG3DSA:3.30.160.601.7E-53159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6143360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESNQANQEN SDQVMTSDDQ QQEGASKQAA KSYECNFCKR GFSNAQALGG HMNIHRKDKA  60
KLKQVSSSNT VETKHQHQHQ QQQKLLDIPK MPSSYSPILP TINSLQHDKP IGHDIDRSTT  120
RAPWPWFLDE ESDTTIQQLP LFSQTPSHNI HHQNPGIPQV HGDQSEKSLQ LSGSQLDLEL  180
RLGPEPQNSS SSTENTTRKF F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3704930.0HM370493.1 Malus domestica zinc finger protein (SUP11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384923.21e-138transcriptional regulator TAC1
TrEMBLS4S3531e-146S4S353_MALDO; Zinc finger protein
STRINGXP_008384923.11e-147(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-16C2H2 family protein