PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000882983
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 394aa    MW: 44490.3 Da    PI: 4.6193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000882983genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.92.6e-42241531128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    l pGfrF Ptde lv++yLk+kv+g++ ++ + i+e+d++k+eP dLp    + +ekewyfFs+ d ky +++r nrat++g+ k tgk++e+ ++
  MDP0000882983  24 LLPGFRFYPTDELLVSYYLKNKVQGTDSHFRHLIPEIDVCKYEPXDLPaFFPEDQEKEWYFFSRPDYKYINSTRCNRATEQGFYKITGKEREIRAE 119
                    579**************************9889***************445566888*************************************98 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++g k++L+fy+grapk++ktdW +hey l
  MDP0000882983 120 eSKAVIGKKRILTFYEGRAPKAKKTDWXVHEYYL 153
                    566779**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4518174IPR003441NAC domain
PROSITE profilePS5100547.79224176IPR003441NAC domain
PfamPF023656.1E-2026152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSSSSISSSM TTEEGDAVHV NLILLPGFRF YPTDELLVSY YLKNKVQGTD SHFRHLIPEI  60
DVCKYEPXDL PAFFPEDQEK EWYFFSRPDY KYINSTRCNR ATEQGFYKIT GKEREIRAEE  120
SKAVIGKKRI LTFYEGRAPK AKKTDWXVHE YYLTEXQVGS KPTKQMDXVL CRLKNNSASY  180
KKPKGDPIRG ELADSGANSE DDQAVVSDVN HVIAEPVEHL GEKELGISQV SLSLDDGDDD  240
TGFWKFSDFD DPAIFLELCA EMGEILNSPS QPLQQTPQPH QPPHPHQPSQ PHQPQDYCPP  300
TLQSPLHTLP GSVSHVHGDC XRRQSLIPDN ISYLEFKNNI STCDPNECMG PPFDPLQDYL  360
LLSPMNTELG DGVHPNNYIG CNDELRSPDD MEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-3471821171NO APICAL MERISTEM PROTEIN
1ut4_B1e-3471821171NO APICAL MERISTEM PROTEIN
1ut7_A1e-3471821171NO APICAL MERISTEM PROTEIN
1ut7_B1e-3471821171NO APICAL MERISTEM PROTEIN
4dul_A1e-3471821171NAC domain-containing protein 19
4dul_B1e-3471821171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140820.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955738.10.0NAC domain-containing protein 55-like
TrEMBLA0A498KH050.0A0A498KH05_MALDO; Uncharacterized protein
STRINGXP_008359516.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-39NAC transcription factor-like 9