PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000899280
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 294aa    MW: 33058.1 Da    PI: 6.6301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000899280genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06125144120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C+k+F+r  n++ H+
  MDP0000899280 125 FSCPVCSKTFNRYNNMQMHM 144
                    89*****************9 PP
2zf-C2H213.90.00016210232123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  + + ++H +++
  MDP0000899280 210 FGCRKCGKPFAVRGDWRTHEKNC 232
                    56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-5121148No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6125144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.679125152IPR007087Zinc finger, C2H2
PfamPF128740.001125144No hitNo description
SMARTSM003550.054125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SMARTSM00355220173205IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.67E-6193230No hitNo description
Gene3DG3DSA:3.30.160.608.4E-5196230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140210230IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQTPFTSTTI DEDFQDEDSI FLSLGPPGLD NHVPKQYHLI YHHXSSSSTQ PDHHQTFYHD  60
YPNPNPDPED GTVTVALNIG PPSSGGGRPS SSFISNPNHN HIGGPVEGQY WIPSPAQILV  120
GPTQFSCPVC SKTFNRYNNM QMHMWGHGSE YRKGPESLRG TKPASSVLRL PCYCCAEGCK  180
NNIEHPRSRP LKDFRTLQTH YKRKHGTKPF GCRKCGKPFA VRGDWRTHEK NCGKLWFCIC  240
GSDFKHKRSL KDHVRGFGDG HAPYAVELCT EPEEEDHMDD EDDDNNDDDL VIX*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390016.20.0zinc finger protein WIP6
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A498I8T90.0A0A498I8T9_MALDO; Uncharacterized protein
STRINGXP_008390016.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein