PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000899816
Common NameHD16
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26908 Da    PI: 6.181
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000899816genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-203486456
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++f++eq+  Le+ Fe ++++  +++ +LA++lgL+ rqV +WFqNrRa++k
  MDP0000899816 34 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 86
                   468*************************************************9 PP
2HD-ZIP_I/II119.81.4e-3833123292
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    + rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd+l+++ e+L++e+++L  +l+
  MDP0000899816  33 NTRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDLRSLREDYDKLASRFESLKEEKQSLLMQLH 123
                    579***********************************************************************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-202289IPR009057Homeodomain-like
PROSITE profilePS5007117.9932888IPR001356Homeobox domain
SMARTSM003891.0E-193192IPR001356Homeobox domain
CDDcd000868.94E-173289No hitNo description
PfamPF000462.6E-173486IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-203494IPR009057Homeodomain-like
PRINTSPR000313.3E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000313.3E-66884IPR000047Helix-turn-helix motif
PfamPF021835.1E-988123IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MERSKEECYE EENLDYGIEP QSAMKRKKNK SKNTRRFSDE QISLLESIFE ADSKLEPRRK  60
VQLARELGLQ PRQVAIWFQN RRARWKSKQI EQDLRSLRED YDKLASRFES LKEEKQSLLM  120
QLHLQKLHDL VGTSRDGAPP EDSLANQTAD GSSYKEGNCK TSARVRLEEA LEQRGAIDSH  180
TSHDVGGEFG DEIHDLLNIG QLDASLTPQG LHRLDSGNIL VDRCNSHWLN FWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12435KRKKNKSKNTRR
28088RRARWKSKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79630.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281285.11e-168homeobox-leucine zipper protein ATHB-12-like
TrEMBLD9ZJ091e-167D9ZJ09_MALDO; HD domain class transcription factor
STRINGXP_008376788.11e-168(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-38homeobox 7