PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000905533

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 101aa MW: 10277.2 Da PI: 4.8189

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000905533	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.2e-07	30	60	2	32
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg 32 +W t+E++ll++avk++G ++ +t+a +++ MDP0000905533 30 SSWGTWEELLLACAVKRYGIHDRDTVAMELQ 60 58*************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MKGGAATGGS PSFNNNNITT TSDQTTTSTS SWGTWEELLL ACAVKRYGIH DRDTVAMELQ 60 AKISLSPSTE TCSSSSTMPS SSSPNPPSSQ GLLTNSAASS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008350169.2	4e-28	uncharacterized protein LOC103413485
TrEMBL	A0A498KJ89	3e-27	A0A498KJ89_MALDO; Uncharacterized protein
STRING	XP_008350169.1	2e-27	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1870	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	1e-09	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	MDP0000905533