PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000905888
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 182aa    MW: 20601.5 Da    PI: 9.4885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000905888genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05108129223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    kC +C++ F ++ n+krHir+H
  MDP0000905888 108 KCDKCPQEFCSSINYKRHIRVH 129
                    7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66107134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4108139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGPVRGVRKR KKAEKNDSPA DGYCEENASI YGSSEKEGLV DWWDEASRRI NVLHLTTVWA  60
NVQMAKLLNP TSFKAISHFI ANRSKIKLIL LAELLPLPHA PIKVQMQKCD KCPQEFCSSI  120
NYKRHIRVHH RLKKLDKMVQ LCGHDGYNGG RHGQETDFQS EVRANEPGFE DDQAHKPSSA  180
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1711RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.19e-10C2H2-like zinc finger protein