PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000909160

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 173aa MW: 20011 Da PI: 8.8391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000909160	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q++ Le+ F++n+++ e++ LAk+l ++ rqV +W+qN+Ra++k MDP0000909160 16 SKKRLTQDQVKLLERSFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69 56789************************************************9 PP
2	HD-ZIP_I/II	108.2	5.8e-35	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl+++qvklLE+sF +++kLeperK la++L + prqva+W+qn+RAR+kt+ lE dy+a+++++++ +e++rLek+ e+Lr elk+ MDP0000909160 16 SKKRLTQDQVKLLERSFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLEFDYSAIQAKLESTLAEKRRLEKDIERLRGELKK 107 59*************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.92	11	71	IPR001356	Homeobox domain
SMART	SM00389	3.2E-13	13	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-17	14	80	IPR009057	Homeodomain-like
CDD	cd00086	1.04E-12	14	72	No hit	No description
Pfam	PF00046	5.8E-15	15	69	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-17	18	78	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDFFHSSNHK NQFKHSKKRL TQDQVKLLER SFASNNKLEP ERKLLLAKQL AIPPRQVAIW 60 YQNKRARWKT QSLEFDYSAI QAKLESTLAE KRRLEKDIER LRGELKKAHE IVLALNQQSQ 120 XFPDNPVICS VFDSSNCSDE GVGSSSLQPH EDDXVKQLEE LYACLIGMQX WV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008367179.2	1e-121	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A498K457	1e-119	A0A498K457_MALDO; Uncharacterized protein
STRING	XP_008367179.1	1e-122	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	5e-38	homeobox protein 52

Link Out ? help Back to Top
Phytozome	MDP0000909160